PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10025269m
Common NameEUTSA_v10025269mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family C3H
Protein Properties Length: 429aa    MW: 46685.9 Da    PI: 6.8042
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10025269mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.4e-08103125326
                      S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      ++lCrf+   G C+yGd+C++ H+
  Thhalv10025269m 103 EKLCRFWVD-GNCPYGDKCRYLHC 125
                      579******.*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.0662551IPR000571Zinc finger, CCCH-type
SMARTSM003560.0232750IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.751100127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6101124IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5102126IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-6103125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-7104122IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.106.4E-16123241IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003207.3E-5131170IPR001680WD40 repeat
SuperFamilySSF509783.57E-44132421IPR017986WD40-repeat-containing domain
PfamPF004000.0023134170IPR001680WD40 repeat
PROSITE profilePS5008212.38138179IPR001680WD40 repeat
PROSITE profilePS5029419.749138340IPR017986WD40-repeat-containing domain
PROSITE patternPS006780157171IPR019775WD40 repeat, conserved site
PRINTSPR003201.6E-5157171IPR020472G-protein beta WD-40 repeat
SMARTSM003201.3210247IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.102.7E-29242421IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.2254291IPR001680WD40 repeat
PROSITE profilePS5008211.01261300IPR001680WD40 repeat
PRINTSPR003201.6E-5278292IPR020472G-protein beta WD-40 repeat
SMARTSM003201.9E-4294331IPR001680WD40 repeat
PfamPF004000.0028296330IPR001680WD40 repeat
PRINTSPR003201.6E-5318332IPR020472G-protein beta WD-40 repeat
SMARTSM0032036335378IPR001680WD40 repeat
SMARTSM003204.2381418IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MDLDMNGGNK RVFERLGGSN RPTTESNQKV CFHWRAGRCN RYPCPYLHSE FPGPIAGSSS  60
NKRVADESGF AGPSHRRGPG FSGSSNNWGR FGGNRTTMVA KTEKLCRFWV DGNCPYGDKC  120
RYLHCWSKGD GFSLLTQLDG HQKVVTGIAL PSGSDKLYTA SKDETARIWD CASGQCTGVL  180
NLGGEVGCMI SEGPWLLVGL PNLIKAWNIQ NNVDLSLTGP VGQVYSMVVG TDLLFAGTQD  240
GSILVWRYNA ATSCFDPAAS LMGHTLAVVS LYVGANRLYS GSMDNFIKVW SLDNLQCIQT  300
LTEHTSVVMS LICWDQFLLS CSLDNTVKIW AATEGGNLEV TYTHKEEYGV LALCGVHDAE  360
AKPILLCSCN DNSLHLYELP SFTERGKILA NQEIRSIQIG PGGIFFTGDG TGQVKVWKWC  420
TEPTAIQS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ovp_B3e-16117381172392F-box/WD repeat protein 7
2ovq_B3e-16117381172392F-box/WD repeat protein 7
2ovr_B3e-16117381172392F-box/WD repeat protein 7
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2520630.0AJ252063.1 Arabidopsis thaliana partial mRNA for zfwd1 protein (zfwd1 gene).
GenBankBT0261220.0BT026122.1 Arabidopsis thaliana.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413303.10.0hypothetical protein EUTSA_v10025269mg
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLV4P5I40.0V4P5I4_EUTSA; Uncharacterized protein
STRINGAT4G25440.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18392869
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1